3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAGAAC*GAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_293 not in the Motif Atlas
Homologous match to IL_5J7L_304
Geometric discrepancy: 0.0781
The information below is about IL_5J7L_304
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_12566.4
Basepair signature
cWW-L-tHS-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6N1D|1|B23S|G|1651
6N1D|1|B23S|A|1652
6N1D|1|B23S|G|1653
6N1D|1|B23S|A|1654
6N1D|1|B23S|A|1655
6N1D|1|B23S|C|1656
*
6N1D|1|B23S|G|2004
6N1D|1|B23S|A|2005
6N1D|1|B23S|C|2006

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain BL03
50S ribosomal protein L3
Chain BL17
50S ribosomal protein L17

Coloring options:


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