IL_6N1D_297

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6N1D|1|B23S|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_297 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1604

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6N1D|1|B23S|C|1686
6N1D|1|B23S|G|1687
6N1D|1|B23S|U|1688
6N1D|1|B23S|A|1689
6N1D|1|B23S|A|1690
6N1D|1|B23S|C|1691
*
6N1D|1|B23S|G|1696
6N1D|1|B23S|G|1697
6N1D|1|B23S|A|1698
6N1D|1|B23S|G|1699
6N1D|1|B23S|A|1700
6N1D|1|B23S|A|1701
6N1D|1|B23S|G|1702

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL02

50S ribosomal protein L2