IL_6N1D_308
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 6N1D|1|B23S|C|2055, 6N1D|1|B23S|C|2612, 6N1D|1|B23S|U|2613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_308 not in the Motif Atlas
- Homologous match to IL_9DFE_079
- Geometric discrepancy: 0.2185
- The information below is about IL_9DFE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70335.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N1D|1|B23S|A|2054
6N1D|1|B23S|C|2055
6N1D|1|B23S|G|2056
6N1D|1|B23S|A|2057
*
6N1D|1|B23S|U|2611
6N1D|1|B23S|C|2612
6N1D|1|B23S|U|2613
6N1D|1|B23S|A|2614
6N1D|1|B23S|U|2615
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain BL03
- 50S ribosomal protein L3
- Chain BL22
- 50S ribosomal protein L22
- Chain BL32
- 50S ribosomal protein L32
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