IL_6N1D_310

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6N1D|1|B23S|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_310 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.0954

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6N1D|1|B23S|G|2070
6N1D|1|B23S|A|2071
*
6N1D|1|B23S|U|2438
6N1D|1|B23S|A|2439
6N1D|1|B23S|C|2440
6N1D|1|B23S|C|2441

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BATN

Transfer RNA; tRNA

Chain BL02

50S ribosomal protein L2

Chain BL04

50S ribosomal protein L4