IL_6N1D_312

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_312 not in the Motif Atlas

Homologous match to IL_7A0S_078

Geometric discrepancy: 0.153

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6N1D|1|B23S|C|2085
6N1D|1|B23S|U|2086
6N1D|1|B23S|G|2087
*
6N1D|1|B23S|U|2232
6N1D|1|B23S|U|2233
6N1D|1|B23S|G|2234

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL28

50S ribosomal protein L28

Chain BPTN

Transfer RNA; tRNA