3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_313 not in the Motif Atlas
Geometric match to IL_5J7L_259
Geometric discrepancy: 0.1563
The information below is about IL_5J7L_259
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6N1D|1|B23S|C|2108
6N1D|1|B23S|U|2109
6N1D|1|B23S|G|2110
*
6N1D|1|B23S|C|2179
6N1D|1|B23S|U|2180
6N1D|1|B23S|G|2181

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain BL01
50S ribosomal protein L1
Chain BPTN
Transfer RNA; tRNA

Coloring options:


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