IL_6N1D_316

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6N1D|1|B23S|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_316 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.431

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6N1D|1|B23S|C|2129
6N1D|1|B23S|U|2130
6N1D|1|B23S|G|2131
6N1D|1|B23S|U|2132
6N1D|1|B23S|G|2133
6N1D|1|B23S|A|2134
6N1D|1|B23S|A|2135
6N1D|1|B23S|C|2136
*
6N1D|1|B23S|G|2155
6N1D|1|B23S|G|2156
6N1D|1|B23S|G|2157
6N1D|1|B23S|A|2158
6N1D|1|B23S|G|2159

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL01

50S ribosomal protein L1