IL_6N1D_319

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

6N1D|1|B23S|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_319 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.2668

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6N1D|1|B23S|U|2401
6N1D|1|B23S|C|2402
6N1D|1|B23S|C|2403
*
6N1D|1|B23S|G|2414
6N1D|1|B23S|G|2415

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL15

50S ribosomal protein L15

Chain BL33

50S ribosomal protein L33

Chain BL35

50S ribosomal protein L35