IL_6N1D_323

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_323 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.1839

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6N1D|1|B23S|A|2459
6N1D|1|B23S|U|2460
6N1D|1|B23S|C|2461
*
6N1D|1|B23S|G|2489
6N1D|1|B23S|G|2490
6N1D|1|B23S|U|2491
6N1D|1|B23S|U|2492
6N1D|1|B23S|U|2493

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL16

50S ribosomal protein L16