IL_6N1D_324

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_324 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1783

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6N1D|1|B23S|C|2466
6N1D|1|B23S|C|2467
6N1D|1|B23S|G|2468
6N1D|1|B23S|A|2469
6N1D|1|B23S|G|2470
*
6N1D|1|B23S|C|2480
6N1D|1|B23S|G|2481
6N1D|1|B23S|G|2482
6N1D|1|B23S|C|2483
6N1D|1|B23S|G|2484

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL16

50S ribosomal protein L16

Chain BL25

50S ribosomal protein L25

Chain BL36

50S ribosomal protein L36