IL_6N1D_335

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6N1D|1|B23S|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_335 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1475

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6N1D|1|B23S|G|2737
6N1D|1|B23S|A|2738
6N1D|1|B23S|U|2739
6N1D|1|B23S|A|2740
6N1D|1|B23S|A|2741
6N1D|1|B23S|C|2742
*
6N1D|1|B23S|G|2762
6N1D|1|B23S|G|2763
6N1D|1|B23S|A|2764
6N1D|1|B23S|A|2765
6N1D|1|B23S|G|2766
6N1D|1|B23S|C|2767

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL06

50S ribosomal protein L6

Chain BL13

50S ribosomal protein L13

Chain BL36

50S ribosomal protein L36