IL_6N1D_366

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_366 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|U|2847
6N1D|1|B23S|G|2848
6N1D|1|B23S|U|2849
6N1D|1|B23S|A|2850
6N1D|1|B23S|A|2851
6N1D|1|B23S|G|2852
*
6N1D|1|B23S|U|2865
6N1D|1|B23S|U|2866
6N1D|1|B23S|G|2867
6N1D|1|B23S|A|2868
6N1D|1|B23S|G|2869

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL17

50S ribosomal protein L17

Chain BL19

50S ribosomal protein L19