IL_6N8J_003
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAUC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 6N8J|1|1|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_003 not in the Motif Atlas
- Geometric match to IL_4V9F_105
- Geometric discrepancy: 0.1832
- The information below is about IL_4V9F_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6N8J|1|1|A|12
6N8J|1|1|A|13
6N8J|1|1|U|14
6N8J|1|1|C|15
*
6N8J|1|3|G|144
6N8J|1|3|U|145
6N8J|1|3|U|146
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
Coloring options: