IL_6N8J_037
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUG*CGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_037 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.2298
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6N8J|1|1|C|1069
6N8J|1|1|U|1070
6N8J|1|1|U|1071
6N8J|1|1|G|1072
*
6N8J|1|1|C|1086
6N8J|1|1|G|1087
6N8J|1|1|U|1088
6N8J|1|1|G|1089
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain T
- 60S ribosomal protein L21-A
- Chain o
- 60S ribosomal protein L29
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