IL_6N8J_056

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUGA*UGCAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8J|1|1|C|1562
6N8J|1|1|C|1563
6N8J|1|1|U|1564
6N8J|1|1|G|1565
6N8J|1|1|A|1566
*
6N8J|1|1|U|1572
6N8J|1|1|G|1573
6N8J|1|1|C|1574
6N8J|1|1|A|1575
6N8J|1|1|G|1576
6N8J|1|1|G|1577

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L8-A

Chain X

60S ribosomal protein L25