IL_6N8J_072

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8J_072 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.1523

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6N8J|1|1|G|1940
6N8J|1|1|C|1941
6N8J|1|1|U|1942
*
6N8J|1|1|A|2106
6N8J|1|1|A|2107
6N8J|1|1|C|2108

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain I

Bud site selection protein 20

Chain R

60S ribosomal protein L19-A