IL_6N8J_074

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CU*GAG

Length

5 nucleotides

Bulged bases

6N8J|1|1|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8J_074 not in the Motif Atlas

Homologous match to IL_8C3A_087

Geometric discrepancy: 0.1386

The information below is about IL_8C3A_087

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6N8J|1|1|C|2128
6N8J|1|1|U|2129
*
6N8J|1|1|G|2323
6N8J|1|1|A|2324
6N8J|1|1|G|2325

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2