IL_6N8J_130

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAAG*CCUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8J|1|1|U|1894
6N8J|1|1|A|1895
6N8J|1|1|A|1896
6N8J|1|1|G|1897
*
6N8J|1|1|C|2338
6N8J|1|1|C|2339
6N8J|1|1|U|2340
6N8J|1|1|A|2341

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain I

Bud site selection protein 20

Chain V

60S ribosomal protein L23-A

Chain u

Ribosome biogenesis protein RLP24