IL_6N8J_144

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

6N8J|1|1|C|2772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8J_144 not in the Motif Atlas

Homologous match to IL_8CRE_110

Geometric discrepancy: 0.309

The information below is about IL_8CRE_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79895.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6N8J|1|1|G|2770
6N8J|1|1|U|2771
6N8J|1|1|C|2772
6N8J|1|1|C|2773
*
6N8J|1|1|G|2787
6N8J|1|1|C|2788

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain q

60S ribosomal protein L42-A