IL_6N8L_025

3D structure

PDB id

6N8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAU*AUUU

Length

7 nucleotides

Bulged bases

6N8L|1|1|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8L_025 not in the Motif Atlas

Geometric match to IL_4V88_475

Geometric discrepancy: 0.2643

The information below is about IL_4V88_475

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6N8L|1|1|G|754
6N8L|1|1|A|755
6N8L|1|1|U|756
*
6N8L|1|1|A|775
6N8L|1|1|U|776
6N8L|1|1|U|777
6N8L|1|1|U|778

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain o

60S ribosomal protein L29

Chain q

60S ribosomal protein L42-A