3D structure

PDB id
6N8L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GACACCACAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
6N8L|1|1|C|1196, 6N8L|1|1|A|1302, 6N8L|1|1|U|1305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N8L_046 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.108
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6N8L|1|1|G|1194
6N8L|1|1|A|1195
6N8L|1|1|C|1196
6N8L|1|1|A|1197
6N8L|1|1|C|1198
6N8L|1|1|C|1199
6N8L|1|1|A|1200
6N8L|1|1|C|1201
6N8L|1|1|A|1202
6N8L|1|1|A|1203
6N8L|1|1|A|1204
6N8L|1|1|A|1205
*
6N8L|1|1|U|1299
6N8L|1|1|G|1300
6N8L|1|1|A|1301
6N8L|1|1|A|1302
6N8L|1|1|A|1303
6N8L|1|1|A|1304
6N8L|1|1|U|1305
6N8L|1|1|G|1306
6N8L|1|1|G|1307
6N8L|1|1|A|1308
6N8L|1|1|U|1309
6N8L|1|1|G|1310
6N8L|1|1|G|1311
6N8L|1|1|C|1312
6N8L|1|1|G|1313
6N8L|1|1|C|1314

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain B
60S ribosomal protein L3
Chain F
60S ribosomal protein L7-A
Chain O
60S ribosomal protein L16-A
Chain f
60S ribosomal protein L33-A

Coloring options:


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