IL_6N8L_059

3D structure

PDB id

6N8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6N8L|1|1|U|1820, 6N8L|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8L_059 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.3088

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6N8L|1|1|G|1623
6N8L|1|1|G|1624
*
6N8L|1|1|U|1819
6N8L|1|1|U|1820
6N8L|1|1|U|1821
6N8L|1|1|C|1822

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38