IL_6N8L_078
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UG*UAAA
- Length
- 6 nucleotides
- Bulged bases
- 6N8L|1|1|A|2242, 6N8L|1|1|A|2243
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8L_078 not in the Motif Atlas
- Homologous match to IL_8C3A_090
- Geometric discrepancy: 0.1326
- The information below is about IL_8C3A_090
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
6N8L|1|1|U|2200
6N8L|1|1|G|2201
*
6N8L|1|1|U|2241
6N8L|1|1|A|2242
6N8L|1|1|A|2243
6N8L|1|1|A|2244
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain v
- 60S ribosomal export protein NMD3
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