IL_6N8L_141
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUUAGUAA*UGAAGCGG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8L_141 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.2904
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6N8L|1|1|C|81
6N8L|1|1|C|82
6N8L|1|1|U|83
6N8L|1|1|U|84
6N8L|1|1|A|85
6N8L|1|1|G|86
6N8L|1|1|U|87
6N8L|1|1|A|88
6N8L|1|1|A|89
*
6N8L|1|1|U|97
6N8L|1|1|G|98
6N8L|1|1|A|99
6N8L|1|1|A|100
6N8L|1|1|G|101
6N8L|1|1|C|102
6N8L|1|1|G|103
6N8L|1|1|G|104
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain q
- 60S ribosomal protein L42-A
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