IL_6N8L_163
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAGCC*GUUGUUA
- Length
- 12 nucleotides
- Bulged bases
- 6N8L|1|1|U|3354, 6N8L|1|1|U|3355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8L_163 not in the Motif Atlas
- Geometric match to IL_8SP9_002
- Geometric discrepancy: 0.3079
- The information below is about IL_8SP9_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6N8L|1|1|U|3346
6N8L|1|1|A|3347
6N8L|1|1|G|3348
6N8L|1|1|C|3349
6N8L|1|1|C|3350
*
6N8L|1|1|G|3353
6N8L|1|1|U|3354
6N8L|1|1|U|3355
6N8L|1|1|G|3356
6N8L|1|1|U|3357
6N8L|1|1|U|3358
6N8L|1|1|A|3359
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain U
- 60S ribosomal protein L22-A
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