IL_6N8M_058

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6N8M|1|A|U|1820, 6N8M|1|A|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_058 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2363

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6N8M|1|A|G|1623
6N8M|1|A|G|1624
*
6N8M|1|A|U|1819
6N8M|1|A|U|1820
6N8M|1|A|U|1821
6N8M|1|A|C|1822

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain t

60S ribosomal protein L34-A

Chain x

60S ribosomal protein L38