IL_6N8M_071

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6N8M|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_071 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1165

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6N8M|1|A|C|1918
6N8M|1|A|G|1919
6N8M|1|A|U|1920
6N8M|1|A|A|1921
6N8M|1|A|A|1922
6N8M|1|A|C|1923
*
6N8M|1|A|G|1928
6N8M|1|A|G|1929
6N8M|1|A|A|1930
6N8M|1|A|U|1931
6N8M|1|A|A|1932
6N8M|1|A|A|1933
6N8M|1|A|G|1934

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain R

60S ribosomal protein L43-A