IL_6N8M_080
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8M_080 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1477
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6N8M|1|A|U|2211
6N8M|1|A|C|2212
6N8M|1|A|A|2213
6N8M|1|A|A|2214
6N8M|1|A|A|2215
6N8M|1|A|G|2216
6N8M|1|A|U|2217
*
6N8M|1|A|A|2228
6N8M|1|A|A|2229
6N8M|1|A|C|2230
6N8M|1|A|C|2231
6N8M|1|A|A|2232
6N8M|1|A|A|2233
6N8M|1|A|G|2234
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain Q
- 60S ribosomal protein L42-A
- Chain S
- Ribosomal Protein uL1
- Chain V
- 60S ribosomal export protein NMD3
- Chain v
- 60S ribosomal protein L36-A
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