IL_6N8M_109

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6N8M|1|A|A|3142, 6N8M|1|A|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_109 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.1294

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6N8M|1|A|C|3004
6N8M|1|A|A|3005
6N8M|1|A|A|3006
6N8M|1|A|U|3007
*
6N8M|1|A|A|3139
6N8M|1|A|G|3140
6N8M|1|A|A|3141
6N8M|1|A|A|3142
6N8M|1|A|C|3143
6N8M|1|A|G|3144

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain b

60S ribosomal protein L16-A