IL_6N8N_009
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGGG*UUCUUUGUA
- Length
- 14 nucleotides
- Bulged bases
- 6N8N|1|A|U|252
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_009 not in the Motif Atlas
- Homologous match to IL_8P9A_239
- Geometric discrepancy: 0.38
- The information below is about IL_8P9A_239
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13358.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
6N8N|1|A|U|169
6N8N|1|A|G|170
6N8N|1|A|G|171
6N8N|1|A|G|172
6N8N|1|A|G|173
*
6N8N|1|A|U|245
6N8N|1|A|U|246
6N8N|1|A|C|247
6N8N|1|A|U|248
6N8N|1|A|U|249
6N8N|1|A|U|250
6N8N|1|A|G|251
6N8N|1|A|U|252
6N8N|1|A|A|253
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain J
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L13-A
- Chain u
- 60S ribosomal protein L35-A
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