IL_6N8N_028

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

6N8N|1|A|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_028 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.2586

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6N8N|1|A|G|833
6N8N|1|A|U|834
6N8N|1|A|G|835
6N8N|1|A|A|836
6N8N|1|A|A|837
6N8N|1|A|G|838
*
6N8N|1|A|U|855
6N8N|1|A|G|856
6N8N|1|A|G|857
6N8N|1|A|A|858
6N8N|1|A|G|859
6N8N|1|A|G|860
6N8N|1|A|C|861

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L43-A

Chain e

60S ribosomal protein L19-A