IL_6N8N_042
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_042 not in the Motif Atlas
- Geometric match to IL_6CZR_134
- Geometric discrepancy: 0.1686
- The information below is about IL_6CZR_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.5
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
6N8N|1|A|U|1173
6N8N|1|A|G|1174
6N8N|1|A|C|1175
6N8N|1|A|C|1176
6N8N|1|A|G|1177
6N8N|1|A|G|1178
6N8N|1|A|A|1179
6N8N|1|A|A|1180
*
6N8N|1|A|U|1325
6N8N|1|A|A|1326
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain I
- 60S ribosomal protein L7-A
- Chain b
- 60S ribosomal protein L16-A
- Chain f
- 60S ribosomal protein L20-A
- Chain s
- 60S ribosomal protein L33-A
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