IL_6N8N_053

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAGUAG*CGAAACC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_053 not in the Motif Atlas

Geometric match to IL_1JBR_001

Geometric discrepancy: 0.2369

The information below is about IL_1JBR_001

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6N8N|1|A|G|1443
6N8N|1|A|G|1444
6N8N|1|A|U|1445
6N8N|1|A|A|1446
6N8N|1|A|G|1447
6N8N|1|A|U|1448
6N8N|1|A|A|1449
6N8N|1|A|G|1450
*
6N8N|1|A|C|2354
6N8N|1|A|G|2355
6N8N|1|A|A|2356
6N8N|1|A|A|2357
6N8N|1|A|A|2358
6N8N|1|A|C|2359
6N8N|1|A|C|2360

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein L4-A

Chain c

60S ribosomal protein L17-A