IL_6N8N_062
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUAAC*GGAAGA
- Length
- 11 nucleotides
- Bulged bases
- 6N8N|1|A|G|1751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_062 not in the Motif Atlas
- Homologous match to IL_8C3A_077
- Geometric discrepancy: 0.1485
- The information below is about IL_8C3A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N8N|1|A|U|1694
6N8N|1|A|U|1695
6N8N|1|A|A|1696
6N8N|1|A|A|1697
6N8N|1|A|C|1698
*
6N8N|1|A|G|1747
6N8N|1|A|G|1748
6N8N|1|A|A|1749
6N8N|1|A|A|1750
6N8N|1|A|G|1751
6N8N|1|A|A|1752
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain t
- 60S ribosomal protein L34-A
- Chain x
- 60S ribosomal protein L38
Coloring options: