IL_6N8N_074

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6N8N|1|A|U|2159, 6N8N|1|A|U|2175, 6N8N|1|A|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_074 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0934

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6N8N|1|A|C|2156
6N8N|1|A|G|2157
6N8N|1|A|A|2158
6N8N|1|A|U|2159
6N8N|1|A|G|2160
6N8N|1|A|G|2161
*
6N8N|1|A|U|2173
6N8N|1|A|G|2174
6N8N|1|A|U|2175
6N8N|1|A|U|2176
6N8N|1|A|G|2177
6N8N|1|A|A|2178
6N8N|1|A|C|2179
6N8N|1|A|G|2180

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L43-A