IL_6N8O_030

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_030 not in the Motif Atlas

Homologous match to IL_5TBW_030

Geometric discrepancy: 0.1333

The information below is about IL_5TBW_030

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6N8O|1|A|U|834
6N8O|1|A|G|835
6N8O|1|A|A|836
6N8O|1|A|A|837
6N8O|1|A|G|838
*
6N8O|1|A|U|855
6N8O|1|A|G|856
6N8O|1|A|G|857
6N8O|1|A|A|858
6N8O|1|A|G|859

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L43-A

Chain e

60S ribosomal protein L19-A