IL_6N8O_043

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

6N8O|1|A|C|1016, 6N8O|1|A|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_043 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3272

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6N8O|1|A|U|1014
6N8O|1|A|U|1015
6N8O|1|A|C|1016
6N8O|1|A|C|1017
6N8O|1|A|G|1018
*
6N8O|1|A|U|1034
6N8O|1|A|G|1035
6N8O|1|A|A|1036

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain M

60S ribosomal protein L11-A