IL_6N8O_070

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_070 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1638

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6N8O|1|A|U|1702
6N8O|1|A|U|1703
6N8O|1|A|A|1704
6N8O|1|A|U|1705
6N8O|1|A|C|1706
6N8O|1|A|A|1707
*
6N8O|1|A|U|1737
6N8O|1|A|C|1738
6N8O|1|A|U|1739
6N8O|1|A|U|1740
6N8O|1|A|A|1741
6N8O|1|A|U|1742
6N8O|1|A|G|1743

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain t

60S ribosomal protein L34-A