IL_6N8O_127

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_127 not in the Motif Atlas

Homologous match to IL_5TBW_128

Geometric discrepancy: 0.2086

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_86432.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6N8O|1|A|C|3235
6N8O|1|A|U|3236
6N8O|1|A|U|3237
6N8O|1|A|G|3238
*
6N8O|1|A|C|3249
6N8O|1|A|U|3250
6N8O|1|A|U|3251
6N8O|1|A|G|3252

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain b

60S ribosomal protein L16-A