IL_6N8O_143
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCGAAUG*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 6N8O|1|A|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8O_143 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2805
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N8O|1|A|G|999
6N8O|1|A|C|1000
6N8O|1|A|G|1001
6N8O|1|A|A|1002
6N8O|1|A|A|1003
6N8O|1|A|U|1004
6N8O|1|A|G|1005
*
6N8O|1|A|C|1045
6N8O|1|A|A|1046
6N8O|1|A|A|1047
6N8O|1|A|A|1048
6N8O|1|A|C|1049
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 60S ribosomal protein L5
- Chain Z
- 60S ribosomal protein L10
- Chain g
- 60S ribosomal protein L21-A
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