IL_6N8O_156

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CAUUG

Length

8 nucleotides

Bulged bases

6N8O|1|A|U|3078, 6N8O|1|A|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_156 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2205

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6N8O|1|A|C|3063
6N8O|1|A|U|3064
6N8O|1|A|G|3065
*
6N8O|1|A|C|3076
6N8O|1|A|A|3077
6N8O|1|A|U|3078
6N8O|1|A|U|3079
6N8O|1|A|G|3080

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain e

60S ribosomal protein L19-A

Chain q

60S ribosomal protein L31-A