IL_6N8O_157

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6N8O|1|A|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_157 not in the Motif Atlas

Geometric match to IL_8VTW_106

Geometric discrepancy: 0.1773

The information below is about IL_8VTW_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49767.7

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6N8O|1|A|G|3102
6N8O|1|A|A|3103
6N8O|1|A|U|3104
6N8O|1|A|U|3105
6N8O|1|A|A|3106
6N8O|1|A|U|3107
*
6N8O|1|A|A|3127
6N8O|1|A|G|3128
6N8O|1|A|A|3129
6N8O|1|A|A|3130
6N8O|1|A|U|3131
6N8O|1|A|C|3132

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain b

60S ribosomal protein L16-A

Chain z

Ubiquitin-60S ribosomal protein L40