IL_6N9E_023
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 6N9E|1|1A|A|835, 6N9E|1|1A|A|836, 6N9E|1|1A|C|837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9E_023 not in the Motif Atlas
- Geometric match to IL_4WF9_027
- Geometric discrepancy: 0.1696
- The information below is about IL_4WF9_027
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6N9E|1|1A|G|822
6N9E|1|1A|G|823
6N9E|1|1A|A|824
*
6N9E|1|1A|U|834
6N9E|1|1A|A|835
6N9E|1|1A|A|836
6N9E|1|1A|C|837
6N9E|1|1A|C|838
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1D
- 50S Ribosomal Protein L2
- Chain 1F
- 50S Ribosomal Protein L4
- Chain 1W
- 50S Ribosomal Protein L22
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