IL_6N9E_030

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUAG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_030 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2965

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6N9E|1|1A|A|917
6N9E|1|1A|U|918
6N9E|1|1A|A|919
6N9E|1|1A|G|920
*
6N9E|1|1A|C|950
6N9E|1|1A|U|951
6N9E|1|1A|G|952
6N9E|1|1A|U|953

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S Ribosomal Protein L16

Chain 1Z

50S ribosomal protein L25