IL_6N9E_046

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6N9E|1|1A|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6N9E|1|1A|C|1253
6N9E|1|1A|G|1254
6N9E|1|1A|A|1255
6N9E|1|1A|U|1256
6N9E|1|1A|G|1257
6N9E|1|1A|A|1258
6N9E|1|1A|A|1259
6N9E|1|1A|G|1260
*
6N9E|1|1A|U|1280
6N9E|1|1A|G|1281
6N9E|1|1A|G|1282
6N9E|1|1A|A|1283
6N9E|1|1A|G|1284

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S Ribosomal Protein L20