IL_6N9E_208

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_208 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1182

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6N9E|1|2A|C|1004
6N9E|1|2A|C|1005
6N9E|1|2A|C|1006
6N9E|1|2A|C|1007
6N9E|1|2A|C|1008
6N9E|1|2A|A|1009
6N9E|1|2A|A|1010
6N9E|1|2A|G|1011
*
6N9E|1|2A|C|1150
6N9E|1|2A|G|1151

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2N

50S Ribosomal Protein L13

Chain 2U

50S Ribosomal Protein L20