IL_6N9E_252

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_252 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3715

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6N9E|1|2A|G|2110
6N9E|1|2A|C|2111
6N9E|1|2A|G|2112
6N9E|1|2A|U|2113
6N9E|1|2A|A|2114
6N9E|1|2A|G|2115
6N9E|1|2A|G|2116
6N9E|1|2A|A|2117
6N9E|1|2A|U|2118
6N9E|1|2A|A|2119
6N9E|1|2A|G|2120
*
6N9E|1|2A|C|2178
6N9E|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains