IL_6N9E_361
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGAG*UGGUC
- Length
- 11 nucleotides
- Bulged bases
- 6N9E|1|1a|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9E_361 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3894
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6N9E|1|1a|G|661
6N9E|1|1a|G|662
6N9E|1|1a|A|663
6N9E|1|1a|G|664
6N9E|1|1a|A|665
6N9E|1|1a|G|666
*
6N9E|1|1a|U|740
6N9E|1|1a|G|741
6N9E|1|1a|G|742
6N9E|1|1a|U|743
6N9E|1|1a|C|744
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1f
- 30S Ribosomal Protein S6
- Chain 1o
- 30S ribosomal protein S15
- Chain 1r
- 30S ribosomal protein S18
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