IL_6N9E_382

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_382 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.1397

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

6N9E|1|2a|G|597
6N9E|1|2a|U|598
6N9E|1|2a|C|599
*
6N9E|1|2a|G|639
6N9E|1|2a|A|640
6N9E|1|2a|U|641
6N9E|1|2a|A|642
6N9E|1|2a|C|643

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2h

30S Ribosomal Protein S8

Chain 2q

30S ribosomal protein S17