IL_6N9F_011

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6N9F|1|1A|A|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_011 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1199

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6N9F|1|1A|C|304
6N9F|1|1A|G|305
6N9F|1|1A|A|306
6N9F|1|1A|A|307
6N9F|1|1A|U|308
*
6N9F|1|1A|A|381
6N9F|1|1A|U|382
6N9F|1|1A|A|383
6N9F|1|1A|G|384

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains